Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0731937 with 44 members (Complement component 5a receptor)

Mammalia / Theria /

Completeness score: 0.57

‹

This HOG has 13 similar HOGs:

Loading, please wait...

Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0731937	88	46	Complement component 5a receptor
2	HOG:E0680227	35	2	C3a anaphylatoxin chemotactic receptor
3	HOG:E0719763	33	2	-
4	HOG:E0732660	28	86	C5a anaphylatoxin chemotactic receptor
5	HOG:E0702202	19	57	C5a anaphylatoxin chemotactic receptor
6	HOG:E0681219	3	3	anaphylatoxin chemotactic receptor
7	HOG:E0777944.3h	2	2	Derived by automated computational analysis using gene prediction method Gnomon
8	HOG:E0702202.4d.3c	2	2	C5a anaphylatoxin chemotactic receptor
9	HOG:E0702202.4d.1b	2	1	C5a anaphylatoxin chemotactic receptor
10	HOG:E0712860	1	11	G-protein coupled receptors family
11	HOG:E0702219	1	2	receptor
12	HOG:E0702202.4b	1	1	C5a anaphylatoxin chemotactic receptor
13	HOG:E0650273.1b	1	1	Putative muscarinic acetylcholine receptor gar-2

Showing 1 to 13 of 13 rows rows per page